pkgsrcv2.git not syncing correctly; around 400 missing files

[John Marino <dragonflybsd@xxxxxxxxx>]

I have been using pkgsrc from our git mirror (pkgsrcv2), but I recently
noticed some patches were missing as it caused me to submit a bad patch
to pkgsrc while fixing multimedia/xine-lib port, and since then I've
found many missing files.

I pulled pkgsrc via CVS and created a script to compare both
repositories.  I had to tell diff to ignore differences that we caused
by CVSID tags (e.g. $NetBSD$ and $Id$) because for some reason these
CVSIDs were the only difference in hundreds of files.

The result is attached.
367 files are shown as missing and the remaining 36 are shown as different.

At the very least, this report could be used to manually sync
pkgsrcv2.git, but it appears something systematic is amiss due to the
large number of missing patches.  Hopefully this can be fixed?

Regards,
John

DIFF:    archivers/libarchive/files/contrib/libarchive.spec
DIFF:    archivers/libarchive/files/contrib/libarchive.1aix53.spec
DIFF:    archivers/libarchive/files/build/windows/mvcpp.nt
DIFF:    archivers/libarchive/files/build/windows/wccpp.nt
MISSING: audio/libsndfile/patches/patch-aa
MISSING: audio/libsndfile/patches/patch-ab
MISSING: audio/libsndfile/patches/patch-ac
MISSING: audio/pulseaudio/patches/patch-src_pulsecore_svolume_mmx.c
MISSING: comms/libopensync/patches/patch-af
MISSING: converters/qrencode/patches/patch-libqrencode.pc.in
MISSING: databases/qdbm/patches/patch-ak
MISSING: databases/sqlitebrowser/patches/patch-sqlitebrowser_sqlbrowser__util.c
MISSING: devel/atk/patches/patch-aa
MISSING: devel/atk/patches/patch-ab
MISSING: devel/liboil/patches/patch-ae
MISSING: devel/roundup/patches/patch-setup-py
MISSING: devel/xulrunner/patches/patch-security_nss_cmd_shlibsign_sign.sh
MISSING: devel/xulrunner/patches/patch-toolkit_toolkit-tiers.mk
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_platform__file__posix.cc
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_debug__util__posic.cc
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_file__util.h
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_file__util__posix.cc
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_platform__thread__posix.cc
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_sys__info__posix.cc
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_base_third__party_nspr_prcpucfg.h
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_build_build__config.h
MISSING: devel/xulrunner/patches/patch-ipc_chromium_src_chrome_common_ipc__channel__posix.h
MISSING: devel/gps/patches/patch-ah
MISSING: devel/gps/patches/patch-ai
MISSING: devel/gps/patches/patch-aj
MISSING: devel/p5-File-Listing/Makefile
MISSING: devel/p5-File-Listing/DESCR
MISSING: devel/p5-File-Listing/distinfo
MISSING: devel/py-funcparserlib/Makefile
MISSING: devel/py-funcparserlib/DESCR
MISSING: devel/py-funcparserlib/distinfo
MISSING: devel/py-funcparserlib/PLIST
MISSING: devel/py-testtools/Makefile
MISSING: devel/py-testtools/DESCR
MISSING: devel/py-testtools/distinfo
MISSING: devel/py-testtools/PLIST
MISSING: devel/lua-lrexlib/DESCR.common
MISSING: devel/lua-lrexlib/Makefile
MISSING: devel/lua-lrexlib/Makefile.common
MISSING: devel/lua-lrexlib/Makefile.version
MISSING: devel/lua-lrexlib/distinfo
MISSING: devel/lua-lrexlib/patches/patch-aa
MISSING: devel/lua-lrexlib/patches/patch-ab
MISSING: devel/lua-lrexlib/patches/patch-ac
MISSING: devel/lua-lrexlib-onig/Makefile
MISSING: devel/lua-lrexlib-onig/DESCR
MISSING: devel/lua-lrexlib-onig/Makefile.common
MISSING: devel/lua-lrexlib-onig/PLIST
MISSING: devel/lua-lrexlib-pcre/Makefile
MISSING: devel/lua-lrexlib-pcre/DESCR
MISSING: devel/lua-lrexlib-pcre/PLIST
MISSING: devel/lua-lrexlib-posix/Makefile
MISSING: devel/lua-lrexlib-posix/DESCR
MISSING: devel/lua-lrexlib-posix/PLIST
MISSING: emulators/gxemul/patches/patch-ad
MISSING: emulators/gxemul/patches/patch-ae
MISSING: emulators/gxemul/patches/patch-af
MISSING: emulators/qemu/patches/patch-ioport.c
MISSING: filesystems/glusterfs/PLIST.georeplication
MISSING: filesystems/glusterfs/options.mk
MISSING: filesystems/fuse-ext2/Makefile
MISSING: filesystems/fuse-ext2/DESCR
MISSING: filesystems/fuse-ext2/distinfo
MISSING: filesystems/fuse-ext2/PLIST
MISSING: filesystems/fuse-ext2/patches/patch-aa
MISSING: filesystems/fuse-ext2/patches/patch-ab
MISSING: filesystems/fuse-ext2/patches/patch-ac
MISSING: filesystems/fuse-ext2/patches/patch-af
MISSING: filesystems/fuse-ext2/patches/patch-ag
MISSING: games/maelstrom-x11/patches/patch-macres_cpp
MISSING: games/maelstrom-x11/patches/patch-maelstrom_sound_cpp
MISSING: games/maelstrom-x11/patches/patch-randtest_cpp
MISSING: games/maelstrom-x11/patches/patch-testlist_cpp
DIFF:    graphics/vcg/files/globals.h
MISSING: graphics/py-blockdiag/Makefile
MISSING: graphics/py-blockdiag/DESCR
MISSING: graphics/py-blockdiag/distinfo
MISSING: graphics/py-blockdiag/PLIST
MISSING: ham/locator/patches/patch-locator.cc
MISSING: lang/gcc/patches/patch-Makefile.in
MISSING: lang/gcc/patches/patch-gcc_Makefile.in
MISSING: lang/gcc/patches/patch-gcc_ch_Make-lang.in
MISSING: lang/gcc/patches/patch-gcc_cp_Make-lang.in
MISSING: lang/gcc/patches/patch-gcc_f_Make-lang.in
MISSING: lang/gcc/patches/patch-gcc_intl_Makefile.in
MISSING: lang/gcc/patches/patch-gcc_java_Make-lang.in
MISSING: lang/gcc/patches/patch-libchill_Makefile.in
MISSING: lang/gcc/patches/patch-libf2c_Makefile.in
MISSING: lang/gcc/patches/patch-libio_Makefile.in
DIFF:    lang/gcc3-ada/files/5netbsdsystem.ads
MISSING: lang/perl5/patches/patch-ad
MISSING: lang/icc11/MESSAGE
MISSING: lang/icc11/DESCR
MISSING: lang/icc11/Makefile
MISSING: lang/icc11/PLIST
MISSING: lang/icc11/distinfo
MISSING: lang/icc11/files/Makefile
MISSING: lang/icc11/files/README.bsd
MISSING: lang/icc11/files/README.pkgsrc
MISSING: lang/icc11/files/as.c
MISSING: lang/icc11/files/icc
MISSING: lang/icc11/files/icc11bsd.c
MISSING: lang/icc11/files/ld.c
MISSING: lang/icc11/files/util.c
MISSING: lang/icc11/files/util.h
MISSING: lang/icc11/files/xiar
MISSING: lang/icc11/files/linux/icc
MISSING: lang/icc11/patches/patch-aa
MISSING: lang/icc11/patches/patch-ab
MISSING: lang/icc11/patches/patch-ac
MISSING: lang/icc11/patches/patch-ad
MISSING: lang/icc11/patches/patch-ae
MISSING: lang/icc11/patches/patch-af
MISSING: lang/icc11/patches/patch-ag
MISSING: lang/icc11/patches/patch-ah
DIFF:    licenses/sendmail-open-source-license
DIFF:    licenses/sendmail-license
DIFF:    licenses/sysinfo-license
MISSING: mail/evolution-data-server/patches/patch-ab
MISSING: mail/mew/patches/patch-mew-ssl.el
DIFF:    mbone/rat/patches/patch-aa
MISSING: misc/openoffice3/patches/patch-aj
MISSING: misc/openoffice3/patches/patch-al
MISSING: misc/openoffice3/patches/patch-at
MISSING: misc/openoffice3/patches/patch-au
MISSING: multimedia/mplayer-share/patches/patch-stream_dvb_tune.c
MISSING: multimedia/mplayer-share/patches/patch-stream_dvbin.h
MISSING: multimedia/vlc/patches/patch-au
MISSING: multimedia/vlc/patches/patch-av
MISSING: multimedia/vlc/patches/patch-modules_audio__output_pulse.c
MISSING: multimedia/xine-lib/patches/patch-input_dvb.c
MISSING: multimedia/xine-lib/patches/patch-gb
MISSING: multimedia/dvb-apps/Makefile
MISSING: multimedia/dvb-apps/DESCR
MISSING: multimedia/dvb-apps/distinfo
MISSING: multimedia/dvb-apps/PLIST
MISSING: multimedia/dvb-apps/patches/patch-util_scan_diseqc.c
MISSING: multimedia/dvb-apps/patches/patch-util_scan_diseqc.h
MISSING: multimedia/dvb-apps/patches/patch-util_scan_dump-vdr.c
MISSING: multimedia/dvb-apps/patches/patch-util_scan_dump-vdr.h
MISSING: multimedia/dvb-apps/patches/patch-util_scan_dump-zap.c
MISSING: multimedia/dvb-apps/patches/patch-util_scan_dump-zap.h
MISSING: multimedia/dvb-apps/patches/patch-util_scan_lnb.c
MISSING: multimedia/dvb-apps/patches/patch-util_scan_scan.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbaudio.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbca.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbdemux.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbfe.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_endianops.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbnet.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libdvbapi_dvbvideo.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_caption__service__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_cvct__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_dccsct__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_dcct__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_eit__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_ett__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_mgt__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_service__location__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_stt__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_time__shifted__service__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_atsc_tvct__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_ait__application__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_ait__application__icons__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_ait__external__application__authorisation__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_announcement__support__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_bat__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_application__signalling__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_ca__identifier__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_cable__delivery__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_cell__frequency__link__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_cell__list__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_content__identifier__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_data__broadcast__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_data__broadcast__id__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_eit__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_frequency__list__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_int__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_ip__mac__stream__location__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_linkage__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_mhp__data__broadcast__id__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_mosaic__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_nit__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_nvod__reference__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_partial__transport__stream__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_pdc__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_private__data__specifier__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_rnt__rar__over__dvb__stream__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_rnt__rnt__scan__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_rst__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_satellite__delivery__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_sdt__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_service__availability__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_service__list__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_service__move__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_sit__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_subtitling__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_terrestrial__delivery__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_time__shifted__event__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_time__shifted__service__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_tot__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_dvb_tva__id__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_ca__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_content__labelling__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_copyright__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_external__es__id__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_fmc__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_ibp__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_maximum__bitrate__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_metadata__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_metadata__pointer__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_metadata__std__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_multiplex__buffer__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_multiplex__buffer__utilization__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_odsmt__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_pat__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_pmt__section.c
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_sl__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_private__data__indicator__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_registration__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_smoothing__buffer__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_target__background__grid__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_mpeg_video__window__descriptor.h
MISSING: multimedia/dvb-apps/patches/patch-lib_libucsi_section.h
MISSING: multimedia/dvb-apps/patches/patch-util_atsc__epg_Makefile
MISSING: multimedia/dvb-apps/patches/patch-util_dvbdate_Makefile
MISSING: multimedia/dvb-apps/patches/patch-util_dvbdate_dvbdate.c
MISSING: multimedia/dvb-apps/patches/patch-util_szap_azap.c
MISSING: multimedia/dvb-apps/patches/patch-util_szap_czap.c
MISSING: multimedia/dvb-apps/patches/patch-util_szap_szap.c
MISSING: multimedia/dvb-apps/patches/patch-util_szap_tzap.c
MISSING: multimedia/dvb-apps/patches/patch-util_szap_util.c
MISSING: multimedia/gnome-mplayer/patches/patch-configure
MISSING: multimedia/gnome-mplayer/patches/patch-configure.in
MISSING: multimedia/libass/Makefile
MISSING: multimedia/libass/DESCR
MISSING: multimedia/libass/distinfo
MISSING: multimedia/libass/PLIST
MISSING: multimedia/libass/buildlink3.mk
MISSING: net/libtrace/PLIST.Linux
DIFF:    net/tnftp/files/configure.ac
MISSING: net/dhcpd-pools/patches/patch-src_dhcpd-pools.h
MISSING: net/dhcpd-pools/patches/patch-src_getdata.c
DIFF:    pkgtools/createbuildlink/files/createbuildlink
DIFF:    pkgtools/createbuildlink/files/substplistbasedirs
MISSING: print/tex-version-doc/Makefile
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MISSING: security/libgcrypt/patches/patch-mpi_mpi-inline.h
MISSING: security/libgcrypt/patches/patch-mpi_mpi-internal.h
MISSING: security/ruby-twitter_oauth/Makefile
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MISSING: sysutils/boxbackup-client/patches/patch-aa
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DIFF:    sysutils/munin-node/files/node/node.d.netbsd/df_inode.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/cpu.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/df.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/if_errcoll_.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/forks.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/if_.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/interrupts.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/iostat.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/iostat_ops.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/irqstats.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/load.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/memory.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/memory_pools.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/memory_types.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/netstat.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/nfs_client.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/nfsd.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/open_files.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/processes.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/sensors_.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/swap.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/uptime.in
DIFF:    sysutils/munin-node/files/node/node.d.netbsd/vmstat.in
MISSING: sysutils/xenkernel3/patches/patch-ae
MISSING: sysutils/xenkernel33/patches/patch-ae
MISSING: sysutils/xc3028l-firmware/Makefile
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MISSING: textproc/groonga/patches/patch-tools_Makefile.in
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